Just Start with the Dask LocalCluster
This article is the first article of an ongoing series on using Dask in practice. Each article in this series will be simple enough for beginners, but provide useful tips for real work. The next article in the series is about parallelizing for loops, and other embarssingly parallel operations with .delayed*
There are many ways to run Dask clusters. This article urges users to start as simplistically as possible, and runs through easy ways of doing just that.
Go simple whenever possible
We host and manage multi-node Dask clusters. These clusters can even use GPUs. With Saturn users can access a cluster with hundreds of GPUs with a few clicks.
Just because you have a Ferarri, doesn’t mean you should drive it to the grocery store.
Simpler is usually better.
Your order of scaling should be:
- Start with Pandas. That’s usually enough.
- Running out of memory? Use Pandas with a bigger machine. Saturn now has Jupyter instances with 4 terabytes of RAM
- Try a Dask Local Cluster
- Try a multi-node (and possibly multi-GPU) Dask Cluster
In general, the simpler your stack, the less time you’ll spend tinkering, and the more time you’ll spend being productive. I’m writing this article because I’ve spent time talking to users who use multi-node clusters when they don’t need to. It’s kind of our fault - we make them really easy to spin up.
Your computer has multiple cores (mine has 4). If you’re writing regular Python code, you’re probably only leveraging 1 of those cores. Some of your code (specifically code that calls NumPy, for things like matrix multiplication) is leveraging multiple cores because NumPy knows how to do so. Python doesn’t know how to execute the code you’re writing automatically on multiple cores.
Using a Dask cluster (along with a library that understands how to parallelize over dask) allows you to take advantage of all the cores on your system. Dask comes with some parallelized modules such as
dask.array. Other libraries like Xarray and dask-ml` also integrate with Dask.
Dask can help you scale to enormous data sets with multi-node clusters. Dask can also help you take advantage of all the cores on your computer with LocalCluster
LocalCluster is easier than a multi-node Dask cluster
It’s just easier working with a single machine. On a single machine, htop can help you understand how your system is doing. On a single machine, you don’t have to worry about copying your code, or data files to your cluster of computers. On a single machine, you can see all the logs for your entire Dask cluster in the terminal.
What about multiprocessing?
Multiprocessing is great for embarrassingly parallel problems. For non-embarrassingly parallel problems, you’ll need a tool like Dask that knows how to parallelize complex operations over multiple cores. Since Dask can handle both types of parallel problems, you only have to learn one syntax. Plus, you get the fabulous Dask dashboard to monitor your work.
For non-embarassingly parallel problems, you’ll need a tool like Dask that knows how to paraellelize complex operations over multiple cores.
How do I use LocalCluster
There are many ways to use LocalCluster. I’ll show you the best one.
What not to do
Dask makes it really really easy to get started. Create a Dask client, and you’ve automatically got a
>>> from dask.distributed import Client >>> c = Client() >>> c.cluster LocalCluster(16ff34f9, 'tcp://127.0.0.1:35257', workers=4, threads=8, memory=41.92 GB) >>>
You can also use LocalCluster explicitly in Python
>>> from dask.distributed import Client >>> from dask.distributed import LocalCluster >>> cluster = LocalCluster() >>> client = Client(cluster)
I use this approach when I deploy production data pipelines, but I don’t like doing this for research. If you have multiple Python sessions or notebooks, this approach makes it easy for you to accidentally end up with multiple clusters on your computer. It also makes it harder to view the logs, and find the address of the Dask dashboard.
What to do
Open a terminal.
Open a second terminal.
$ dask-worker tcp://127.0.0.1:8786
In your Python session (possibly a Jupyter notebook), execute the following:
from dask.distributed import Client client = Client('tcp://127.0.0.1:8786')
There you go. The default address for the
tcp://127.0.0.1:8786 and that second command was enough to set up Dask workers connected to the scheduler. The best part of this approach is that all the logs for all of your work will be in the second terminal. To shut it down, just hit
ctrl-c in both terminals.
Processes and Threads
Python has this annoying thing called the global interpreter lock. You don’t need to understand too much about it, except that it means that Python can’t really leverage multiple threads very well. The general exceptions to this rule are code that is mostly doing I/O (downloading data), or code that is leveraging mostly C++ and other non-python libraries (NumPy, for example).
Most users that we’ve worked with are best served using processes over threads (you can mix them as well). This is how I do this on my machine.
- I have 40 GB of RAM (Thank you System76!!)
- I have 4 cores. So I want 4 workers.
- This means each worker can consume 10 GB of RAM.
$ dask-worker tcp://127.0.0.1:8786 --nprocs 4 --memory-limit 10GB
Start simple, and scale up gradually. At Saturn, we can give you 4 terabyte instances for all your local cluster needs. And if that’s not enough, you can then run the same code on a multi-node (and multi-GPU) cluster, with a few clicks. Happy Dask-ing!
- Easily connect to Dask from outside of Saturn Cloud - This blog post walks through using a Saturn Cloud Dask cluster from a client outside of Saturn Cloud
- Saturn Cloud Dask examples - we have examples of using Dask for many different purposes, including machine learning and Dask with GPUs.
- Should I Use Dask?
- Easily Connect to Dask from Outside of Saturn Cloud
- Lazy Evaluation with Dask
- Random Forest on GPUs: 2000x Faster than Apache Spark
- An Intro to Data Science Platforms
- What are Data Science Platforms
- Most Data Science Platforms are a Bad Idea
- Top 10 Data Science Platforms And Their Customer Reviews 2022
- Saturn Cloud: An Alternative to SageMaker
- PDF Saturn Cloud vs Amazon Sagemaker
- Configuring Sagemaker
- Top Computational Biology Platforms
- Top 10 ML Platforms
- What is dask and how does it work?
- Setting up JupyterHub
- Setting up JupyterHub Securely on AWS
- Setting up HTTPS and SSL for JupyterHub
- Using JupyterHub with a Private Container Registry
- Setting up JupyterHub with Single Sign-on (SSO) on AWS
- List: How to Setup Jupyter notebook on EC2
- List: How to Set Up JupyterHub on AWS
About Saturn Cloud
Saturn Cloud is your all-in-one solution for data science & ML development, deployment, and data pipelines in the cloud. Spin up a notebook with 4TB of RAM, add a GPU, connect to a distributed cluster of workers, and more. Join today and get 150 hours of free compute per month.